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Newsletter No. 321
October 5, 2015

ACA News, IUCr Newsletter, IUCr Meetings List

SEPTEMBER 2015 PUBLICATIONS BY MEMBERS OF THE GROUP  

1: Zhao XN, Kumari D, Gupta S, Wu D, Evanitsky M, Yang W, Usdin K. MutSβ
generates both expansions and contractions in a mouse model of the Fragile
X-associated disorders
. Hum Mol Genet. 2015 Sep 29. pii: ddv408. [Epub ahead of
print] PubMed PMID: 26420841.

2: Morgand M, Bouvin-Pley M, Plantier JC, Moreau A, Alessandri E, Simon F, Pace
CS, Pancera M, Ho DD, Poignard P, Bjorkman PJ, Mouquet H, Nussenzweig MC,
Kwong PD, Baty D, Chames P, Braibant M, Barin F. A V1V2 neutralizing epitope is
conserved in divergent non-M groups of HIV-1
. J Acquir Immune Defic Syndr. 2015
Sep 21. [Epub ahead of print] PubMed PMID: 26413851.

3: Gotoh S, Negishi M. Statin-activated nuclear receptor PXR promotes SGK2
dephosphorylation by scaffolding PP2C to induce hepatic gluconeogenesis
. Sci Rep.
2015 Sep 22;5:14076. doi: 10.1038/srep14076. PubMed PMID: 26392083.

4: Li CL, Golebiowski FM, Onishi Y, Samara NL, Sugasawa K, Yang W. Tripartite DNA
Lesion Recognition and Verification by XPC, TFIIH, and XPA in Nucleotide Excision
Repair
. Mol Cell. 2015 Sep 17;59(6):1025-34. doi: 10.1016/j.molcel.2015.08.012.
PubMed PMID: 26384665.

5: Olson MA, Lee MS, Kissner TL, Alam S,
Waugh DS, Saikh KU. Discovery of small
molecule inhibitors of MyD88-dependent signaling pathways using a computational
screen
. Sci Rep. 2015 Sep 18;5:14246. doi: 10.1038/srep14246. PubMed PMID:
26381092.

6: Tugarinov V, Libich DS, Meyer V, Roche J,
Clore GM. The Energetics of a
Three-State Protein Folding System Probed by High-Pressure Relaxation Dispersion
NMR Spectroscopy
. Angew Chem Int Ed Engl. 2015 Sep 14;54(38):11157-61. doi:
10.1002/anie.201505416. PubMed PMID: 26352026.

7: Perera L, Freudenthal BD, Beard WA, Shock DD, Pedersen LG,
Wilson SH.
Requirement for transient metal ions revealed through computational analysis for
DNA polymerase going in reverse
. Proc Natl Acad Sci U S A. 2015 Sep
22;112(38):E5228-36. doi: 10.1073/pnas.1511207112. Epub 2015 Sep 8. PubMed PMID:
26351676.

8: Cash DR, Noinaj N, Buchanan SK, Cornelissen CN. Beyond the Crystal Structure:
Insight into the Function and Vaccine Potential of TbpA expressed by Neisseria
gonorrhoeae
. Infect Immun. 2015 Sep 8. pii: IAI.00762-15. [Epub ahead of print]
PubMed PMID: 26351283.

For timely listing, please send a heads-up E-mail to the Editor upon publication.
TIPS AND TRICKS - Contributions?


ARCHIVE: Introduction, Pre-crystallization, Crystallization, Post-crystallization, Derivatization, Cryoprotection, Diffraction, Symmetry, Structure Solution, Structure Refinement, Structure Analysis & Presentation.

TOPIC DISCUSSION - Suggestions?

ARCHIVE: Test-set-and-R-free, Twinning, Low Resolution Crystallography, PHASER, HKL2000, Parallel Expression, Structural Genomics, NCS, Missing Atoms, Trends in CrystallographyAbsorption Correction, Data for Refinement and Publication.

LECTURES AND TUTORIALS - Dr. Dauter's Lectures Are Back!

DR. ZBIGNIEW DAUTER'S LECTURES AT THE NIH (2005)
 

Part 1: "How to read international tables?"

Part 2: "Data collection strategy" and "Twinning"

           "Phasing methods - a general introduction to all methods"

Part 3: "SAD phasing, Quick halide soaking, and Radiation damage 

            with possible use of it for phasing"


RIGAKU WEBINAR SERIES (2009 - PRESENT)

LOW RESOLUTION PHASING AND REFINEMENT (2011)

CRYSTALLOGRAPHY: SEEING THINGS IN A DIFFERENT LIGHT (2013)

CRYSTALLOGRAPHY: FOR ASPIRING CRYSTALLOGRAPHERS (2013)

 STRUCTURE FACTOR TUTORIAL (2014)

DATA COLLECTION FOR STRUCTURE DETERMENATION (2014)

ACHESYM: AN ALGORITHM AND SERVER FOR STANDARDIZED PLACEMENT OF MACROMOLECULAR MODELS IN THE UNIT CELL (2014)

NATIVE SAD IS MATURING (2015)

 LINKS - Suggestions?     

Databases: BMCD, CryoD, DisProt, ExPASy, HAD, HIC-Up, Metal Sites, NDBPDB, PDBe
,
                 Protein Geometry Database, Scattering

Programs: CCP4, COOT, DSSR, HKLPHENIX, PyMOL, SOLVE, USF, XDS


Servers: ACHESYM,
Anisotropy, CheckMyMetal, Crystal, C6, Dali, DSSR, ESPript
              Grade, PDBePISA, PhyreProbity, Protein, Robetta Fragment & HHpred  

Facilities: 
APS SER-CAT, APS SAXS Capabilities

 
Copyright © NIH X-Ray Diffraction Group                       Maintained by Dr. Xinhua Ji
on the NIH-NCI-CCR-MCL server (http://mcl1.ncifcrf.gov)