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Newsletter No. 312
May 4, 2015

 

Dr. Wei Yang was elected to the American Academy of Arts and Sciences, announced on Aril 22, 2015. Congratulations!

ACA News, IUCr Newsletter, IUCr Meetings List

APRIL 2015 PUBLICATIONS BY MEMBERS OF THE GROUP  


1: Han TH, Dharkar P, Mayer ML, Serpe M. Functional reconstitution of Drosophila
melanogaster NMJ glutamate receptors. Proc Natl Acad Sci U S A. 2015 Apr 27. pii:
201500458. PubMed PMID: 25918369.

2: Barbian HJ, Decker JM, Bibollet-Ruche F, Galimidi RP, West AP Jr, Learn GH,
Parrish NF, Iyer SS, Li Y, Pace CS, Song R, Huang Y, Denny TN, Mouquet H, Martin
L, Acharya P, Zhang B,
Kwong PD, Mascola JR, Verrips CT, Strokappe NM, Rutten L,
McCoy LE, Weiss RA, Brown CS, Jackson R, Silvestri G, Connors M, Burton DR, Shaw
GM, Nussenzweig MC, Bjorkman PJ, Ho DD, Farzan M, Hahn BH. Neutralization
properties of simian immunodeficiency viruses infecting chimpanzees and gorillas.
MBio. 2015 Apr 21;6(2). pii: e00296-15. PubMed PMID: 25900654.

3: Miao Z, Adamiak RW, Blanchet MF, Boniecki M, Bujnicki JM, Chen SJ, Cheng C,
Chojnowski G, Chou FC, Cordero P, Cruz JA,
Ferré-D'Amaré AR, Das R, Ding F,
Dokholyan NV, Dunin-Horkawicz S, Kladwang W, Krokhotin A, Lach G, Magnus M, Major
F, Mann TH, Masquida B, Matelska D, Meyer M, Peselis A, Popenda M, Purzycka KJ,
Serganov A, Stasiewicz J, Szachniuk M, Tandon A, Tian S, Wang J, Xiao Y, Xu X,
Zhang J, Zhao P, Zok T, Westhof E. RNA-Puzzles Round II: assessment of RNA
structure prediction programs applied to three large RNA structures. RNA. 2015
Apr 16. PubMed PMID: 25883046.

4: Wu X, Zhang Z, Schramm CA, Joyce MG, Do Kwon Y, Zhou T, Sheng Z, Zhang B,
O'Dell S, McKee K, Georgiev IS, Chuang GY, Longo NS, Lynch RM, Saunders KO, Soto
C, Srivatsan S, Yang Y, Bailer RT, Louder MK; NISC Comparative Sequencing
Program, Mullikin JC, Connors M,
Kwong PD, Mascola JR, Shapiro L. Maturation and
Diversity of the VRC01-Antibody Lineage over 15 Years of Chronic HIV-1 Infection.
Cell. 2015 Apr 23;161(3):470-85. PubMed PMID: 25865483.

5: Sliwiak J, Dauter Z, Kowiel M, McCoy AJ, Read RJ, Jaskolski M. ANS complex of
St John's wort PR-10 protein with 28 copies in the asymmetric unit: a fiendish
combination of pseudosymmetry with tetartohedral twinning. Acta Crystallogr D
Biol Crystallogr. 2015 Apr;71(Pt 4):829-43. PubMed PMID: 25849394.

6: Liebschner D, Rosenbaum G, Dauter M, Dauter Z. Radiation decay of thaumatin
crystals at three X-ray energies. Acta Crystallogr D Biol Crystallogr. 2015
Apr;71(Pt 4):772-8. doi: 10.1107/S1399004715001030. PubMed PMID: 25849388.

7:
Ferré-D'Amaré AR. On the shoulders of giants. RNA. 2015 Apr;21(4):504-5. doi:
10.1261/rna.050054.115. PubMed PMID: 25780114.


For timely listing, please send a heads-up E-mail to the Editor upon publication.
TIPS AND TRICKS - Contributions?  (Click for PDF reader to view articles)


ARCHIVE: Introduction, Pre-crystallization, Crystallization, Post-crystallization, Derivatization, Cryoprotection, Diffraction, Symmetry, Structure Solution, Structure Refinement, Structure Analysis & Presentation.

TOPIC DISCUSSION - Suggestions?

ARCHIVE: Test-set-and-R-free, Twinning, Low Resolution Crystallography, PHASER, HKL2000, Parallel Expression, Structural Genomics, NCS, Missing Atoms, Trends in CrystallographyAbsorption Correction, Data for Refinement and Publication.

LECTURES AND TUTORIALS NEW ADDITION - ACHESYM

RIGAKU WEBINAR SERIES (2009 - PRESENT)

LOW RESOLUTION PHASING AND REFINEMENT (2011)

CRYSTALLOGRAPHY: SEEING THINGS IN A DIFFERENT LIGHT (2013)

CRYSTALLOGRAPHY: FOR ASPIRING CRYSTALLOGRAPHERS (2013)

 STRUCTURE FACTOR TUTORIAL BY KEVIN COWTAN (2014)

DATA COLLECTION FOR STRUCTURE DETERMENATION (2014)

ACHESYM: AN ALGORITHM AND SERVER FOR STANDARDIZED PLACEMENT OF MACROMOLECULAR MODELS IN THE UNIT CELL (2014)

 LINKS NEW ADDITION -  ACHESYM     

Databases: BMCD, CryoD, DisProt, ExPASy, HAD, HIC-Up, Metal Sites, NDBPDB, PDBe
,
                 Protein Geometry Database, Scattering

Programs: CCP4, COOT, DSSR, HKLPHENIX, PyMOL, SOLVE, USF, XDS


Servers: ACHESYM,
Anisotropy, CheckMyMetal, Crystal, C6, Dali, DSSR, ESPript
              Grade, PDBePISA, PhyreProbity, Protein, Robetta Fragment & HHpred  

Facilities: 
APS SER-CAT, APS SAXS Capabilities

 
Copyright © NIH X-Ray Diffraction Group                       Maintained by Dr. Xinhua Ji
on the NIH-NCI-CCR-MCL server (http://mcl1.ncifcrf.gov)