| Newsletter No. 253 |
March 5, 2012 |
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ACA News, IUCr Meetings List |
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FEBRUARY 2012 PUBLICATIONS BY
MEMBERS
OF
THE GROUP
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| TIPS AND TRICKS - Seeded Screening with a Robot Artem Evdokimov: By
popular request here's
my favorite version of the in-screen seeding. We use a Mosquito but it
doesn't
have to be a specific robot as long as it can dispense relatively
tiny
volumes of seed stock. artem.evdokimov@GMAIL.COM Caveats: (1) If
I am desperate enough to do this, then the situation is pretty bad
indeed
and I don't mind wasting some protein; (2) my success rate is
not
hugely favorable but this does work on occasion when other things have
failed. (1) Identify
a few likely conditions. Ideally they have microcrystals but
desperation has
made me try 'lovable precipitates' in the past, with a modest degree of
success. (2) Harvest
entire drop using a few ul of mother liquor as diluent (3) Break the
existing crystals using your favorite method (sead beed, etc.) mine
involves
swirling a pipette tip in the mixture, running it along the
walls, with
rapid pipetting up and down. Dilute seed stock to useful volume (enough
for
screening). (4) I do not
normally centrifuge the resulting seed stock, but some people do (5) Dispense
your screen as always with the usual protein/reservoir ratio. Let's say
you
like drops of the 0.2ul+0.2ul variety - add 25 nanoliters of the seed
stock
*last*. Optional mixing of the condition is a fun thing to try but it
seems not
to matter very much. Note that I typically use the same tips to
dispense seed
stock, fully aware that this causes cross-contamination of conditions.
I don't
mind :) (5a) Variation
- Add seed stock to protein, then dispense ASAP. Surprisingly not a bad
option,
practically speaking. (5b) Variation
- Crosslink seed stock very gently in solution (with trace of
glutaraldehyde)
before use. Buffers/additives with primary or secondary amine groups do
interfere, of course. (5c) Variation
- Mix seeds from SEVERAL initial hit conditions, then use as one seed
stock. Be
ready for fireworks as they may not be compatible! (6) Endure
nail-biting wait for results :) As noted
earlier, it's not a sure-fire way to get new hit conditions but it does
seem to
work and it's a fun way to put to use a remainder of
otherwise
useless protein (when you've tried all other tricks you like to try). Comments and
suggestions are always welcome! ARCHIVE: Introduction, Pre-crystallization, Crystallization, Post-crystallization, Derivatization, Cryoprotection, Diffraction, Symmetry, Structure Solution, Structure Refinement, Structure Analysis & Presentation. |
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| TOPIC
DISCUSSION - Low Resolution Phasing and Refinement NE-CAT hosted a workshop on Advances in Low to Moderate Resolution Phasing and Refinement in September and compiled abstracts, PowerPoint presentations, video, and audio of the event at their website. If you are interested in this topic, please visit their website at: http://necat.chem.cornell.edu/workshops/lowresolutionworkshop.php ARCHIVE: Test-set-and-R-free, Twinning, Low Resolution Crystallography, PHASER, HKL2000, Parallel Expression, Structural Genomics, NCS, Missing Atoms, Trends in Crystallography, Absorption Correction. |
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| DR. ZBIGNIEW DAUTER'S LECTURE AT
THE NIH (2005)
Part 1: "How to read international tables?" Part 2: "Data collection strategy" and "Twinning" "Phasing methods - a general introduction to all methods" Part 3: "SAD phasing, Quick halide soaking, and Radiation damage with possible use of it for phasing" New Addition: RIGAKU WEBINAR SERIES (2009 - PRESENT) |
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| LINKS
- New
Addition: CheckMyMetal Databases: BMCD, CryoD, DisProt, ExPASy, HAD, HIC-Up, Metal Sites, NDB, PDB, PDBe, Scattering Programs: CCP4, COOT, HKL, PHENIX, PyMOL, SOLVE, USF, XDS Servers: CheckMyMetal, Crystal, C6, Dali, ESPript, Phyre, Probity, Protein |
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| Copyright © NIH X-Ray Diffraction Group Maintained by Dr. Xinhua Ji | |||
| on the NIH-NCI-CCR-MCL server (http://mcl1.ncifcrf.gov) | |||